Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs2944254 chr2:87014377 C/T 4.85E-6 479 32.77 30.37 27.1 KM Plot
THCA rs3020726 chr2:87016506 A/G 5.25E-9 485 31.93 28.43 27.4 KM Plot
THCA rs3026692 chr10:43540651 C/T 1.62E-10 503 31.7 31.53 10.88 KM Plot
THCA rs3068247 chr3:97007626 CAT/C 6.12E-13 501 31.47 32.82 37.77 KM Plot
THCA rs3093737 chr13:108867483 G/C 2.4E-6 494 31.47 31.6 24.63 KM Plot
THCA rs3093739 chr13:108867401 A/G 2.43E-6 493 31.7 31.53 24.63 KM Plot
THCA rs3093773 chr13:108859327 G/C 9.58E-7 494 31.43 31.72 24.63 KM Plot
THCA rs3102742 chr11:77949334 G/T 2.4E-5 498 32.1 31.02 27.3 KM Plot
THCA rs312477 chr3:53515136 G/A 4.09E-5 493 31.68 31.3 31.82 KM Plot
THCA rs3129334 chr4:3368526 T/C 0.000124 492 27.1 31.47 33.08 KM Plot
THCA rs3214238 chr7:43944871 C/CT 1.48E-9 503 31.27 33.5 31.03 KM Plot
THCA rs33927361 chr5:1950081 C/CT 2.66E-15 501 31.77 26.18 18.12 KM Plot
THCA rs34012724 chr6:133132946 CAT/C 0 500 31.5 33.48 29.05 KM Plot
THCA rs34051306 chr6:130367996 C/T 2.93E-7 498 31.28 33.62 32.5 KM Plot
THCA rs34094195 chr1:3707037 C/G 7.89E-5 495 31.67 32.9 19.73 KM Plot